FastQCFastQC Report
Mon 6 Jun 2016
ERR1379328.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379328.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407666
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG301.13906855E-437.49754727
GAGCGGT301.13906855E-437.4975476
AGACCGT301.13906855E-437.49754728
AGCGGTT250.002106193235.9976467
AATGCCG250.002106193235.99764621
CGTATGC352.8182878E-432.14075544
AGAGCGG300.005138884330.0053985
CTCGTAT300.005141968430.00171942
TATCTCG300.005141968430.00171939
GACCGTT300.00514505429.99803729
ACCGTTT300.00514505429.99803730
ATCTCGT406.1572E-428.12661240
TGCCGAG450.00122566424.99836323
ATGCCGA600.00650591518.74877422
GCGGTGG900.0037500214.9990197
CGTGAGC950.00535301514.2165721
TCTCGGC1000.007543302613.49911720
ACTAGAC1403.5995585E-412.85630119
AGAGTGT2201.3038759E-410.22785933
GAGTGTT2109.6759055E-49.64340934
Produced by FastQC (version 0.11.5)