FastQCFastQC Report
Mon 6 Jun 2016
ERR1379326.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379326.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484406
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCTCCG300.00514452629.99979432
CTCGTAT450.001225579524.99982842
AAGAGCG751.6943686E-623.9998364
AGCGGTT602.4647656E-422.4998467
TATCTCG602.4647656E-422.49984639
GAGCGGT602.4647656E-422.4998466
CGCCCGG500.002262823522.49984413
CGGAAGA754.5848603E-521.0063611
GCGGTTC550.003933457720.4544058
CGGTTCA550.003933457720.4544059
CGTATGC600.006505443218.7498744
GACCGTA600.006505443218.7498729
CACTGCG600.006505443218.7498733
CCGTAAA600.006505443218.7498731
CCGAGAC600.006505443218.7498725
GTAAGAC800.001708995616.87488438
AGAGCGG800.001708995616.8748845
ATCTCGT900.00374991914.99989740
AGAGGGT900.00374991914.99989728
GCCCGGC900.00374991914.99989714
Produced by FastQC (version 0.11.5)