FastQCFastQC Report
Mon 6 Jun 2016
ERR1379323.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379323.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442168
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGAGC1108.552933E-414.3227531
ATGTGCC1150.001198888413.6969262
TGTCCAC1450.006814364310.8618519
ACTAGAC1500.0087640610.49978819
GGCTAAT1954.9024227E-410.38440718
GCCACCA3309.832802E-79.5463426
AATGTCC1900.00460968549.4734957
CTCACAC2200.00148180979.2043614
GAGCCAC2453.8510427E-49.1845274
ACTGCTC2606.9765904E-48.65367244
AGCCACC2350.00269599688.6178225
AGCATTC2750.0012170328.18165431
AAGCATT3351.1648394E-48.0595428
GCTAATT2850.00173146587.89457819
TATCTTC3257.4289023E-47.61609274
TGAGCCA3550.00189742756.97247933
AATATCT3600.002199096.87563942
GTGGCTC3350.0083770196.71628310
CCAGCTA4000.00662815346.187375528
AGTGCAG4100.0085500646.0371475
Produced by FastQC (version 0.11.5)