FastQCFastQC Report
Mon 6 Jun 2016
ERR1379320.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379320.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451448
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTTTCG300.005144357729.99955638
GCCACCA2601.7826096E-1013.845956
TACAAGT1352.6466924E-413.33313719
ACTAGAC1403.599351E-412.85695419
AACCAGC1600.001105757511.24983428
GAGCCAC2452.8796549E-611.0214664
CTAGACA2201.3055344E-410.22712220
GCAGTGA2606.6579545E-59.51909141
AGCCACC2150.00120133029.4184665
ACCACAC1950.00570958539.2306339
TATCTTC3653.8599646E-68.6309654
CTGGTCT4152.4527617E-68.1351141
AGTGAGC2500.00471884668.0998843
CTCAGAA4802.821016E-77.96863235
TGAGCCA4001.3191238E-57.8757563
ATTCTCA5151.0335498E-77.86396232
CCACCAC3451.6391018E-47.82597167
TAGACAG2600.00671121157.788347221
GCATTCT3501.9362597E-47.714171430
GCTAATT2650.0079587457.641396519
Produced by FastQC (version 0.11.5)