FastQCFastQC Report
Mon 6 Jun 2016
ERR1379314.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379314.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462975
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT301.1390782E-437.4988342
CGGTTCA301.1390782E-437.498839
ACCGGAG401.5588954E-533.74894730
ATCTCGT352.8165217E-432.1453340
GCGGTTC406.1616633E-428.1241238
CCGAGAC406.1616633E-428.12412325
CCGGAGG507.150843E-526.99915731
TATCTCG450.001224899725.0019239
CGTATGC450.001225671424.9992244
GACCGGA450.001225671424.9992229
TCTCGTA450.001225671424.9992241
AGACCGG450.001225671424.9992228
TCGTATG450.001225671424.9992243
AAGAGCG550.003931292320.4561164
GGCACGA550.00393375320.45390713
AGCGGTT550.00393375320.4539077
AATGCCG550.00393375320.45390721
ATGCCGA550.00393375320.45390722
AGAGCGG550.00393375320.4539075
GAGACCG600.006505932718.74941427
Produced by FastQC (version 0.11.5)