FastQCFastQC Report
Mon 6 Jun 2016
ERR1379305.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379305.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468285
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAC301.13949354E-437.4966229
GCGGTTC507.1538845E-526.9975648
AGCGGTT507.1538845E-526.9975647
CTCGTAT450.001224587425.00308642
CGACATG450.001226113424.99774632
AGACCGA450.001226113424.99774628
GAGCGGT551.3663578E-424.5458626
CGGTTCA551.3673486E-424.5432429
ATCTCGT500.002260998622.50277740
CGTATGC500.002260998622.50277744
TCTCGTA500.002260998622.50277741
GAGACCG500.00226380722.4979727
CCGACAT500.00226380722.4979731
AGAGCGG654.2325887E-420.7695775
AATGCCG654.2356408E-420.76735721
ACCGACA550.003935162420.45270230
CGGAAGA706.9442065E-419.29841
TCGTATG600.006500234418.75231643
AAGAGCG800.00170861116.875284
ATGCCGA800.001709832716.8734822
Produced by FastQC (version 0.11.5)