FastQCFastQC Report
Mon 6 Jun 2016
ERR1379302.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379302.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400292
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAG300.00514392729.9992529
AGACCGA300.00514392729.9992528
GCGATCT602.4640304E-422.49943716
CTAGGGA600.006504195718.7495322
CCACGCC1000.00754097313.49966210
GGCTAAT2502.1287633E-812.59968518
GCCACCA2704.632966E-912.4996886
CTGGCTA1802.3373976E-411.24971916
GCTAATT3754.474714E-1010.7997319
AGCCACC1700.001833315710.5879715
GGAGTGC3257.158633E-810.3843563
TGGCTAA2504.3284606E-59.89975217
GAGCCAC2352.537025E-49.5742294
GAGTGCA3309.838677E-79.5452174
GCACTCC1900.0046082629.47344816
TCAGCTC2000.00702773178.99977522
GGGTTTC2350.00269772938.6168061
CTAATTT5109.840733E-98.38214320
CTGGAGT4051.7367256E-68.3331251
TGGAGTG5151.1712473E-88.3007632
Produced by FastQC (version 0.11.5)