FastQCFastQC Report
Mon 6 Jun 2016
ERR1379300.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379300.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593192
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCACC807.547618E-519.6900445
ACGATCT706.971949E-419.2882082
CGGCTAA600.006508346618.74926217
TACTCGG1156.771051E-515.65287833
CTACTCG1251.3791316E-414.39943432
ACTCGGG1352.6475504E-413.33393334
ACTAGAC1709.388306E-613.23477319
GTAGTCC1701.3761062E-411.91129622
GAAGATC1350.00400183211.667191539
AGCATTC2901.3431418E-811.63747329
GGCTAAT2503.6809233E-610.79957618
TGAGCCG1500.00877123610.49958745
ACCATGC2952.446348E-69.9148649
GCCACCA3909.807991E-99.8081336
GCTAATT4458.5128704E-109.60636319
TGTAGTC2453.8611086E-49.18331121
CCACCAT3206.8927584E-69.1402657
GCTACTC3258.389188E-68.99964631
CATGCCC2000.00703690258.99964511
TAGTCCC2050.0086157198.78014323
Produced by FastQC (version 0.11.5)