FastQCFastQC Report
Mon 6 Jun 2016
ERR1379292.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379292.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415074
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCG300.005144523529.99879827
CCTTCGT600.00650063518.7515091
GTCCACT1000.00754234613.49945719
ACTAGAC1403.5990344E-412.856626519
GCACTCC1607.801683E-512.65574216
ACTGCAC1701.374205E-411.91128613
TGCACTC1853.0140605E-410.94550715
GTCTTGA1500.00876384110.49957825
GCCACCA2605.8691294E-610.3841986
TATCTTC3401.3854333E-79.9260724
CCTCAAA2350.00269558688.6177141
AAGCATT3206.8263E-58.43716128
GGTGGCT2700.00101473688.3329989
CTAGACA2450.003933088.26497420
AGCATTC3309.775772E-58.1814929
TCCACTT3603.0332883E-58.12467411
GAGTGTT3053.759296E-48.11540643
CCACCAC3351.1645858E-48.0593787
GCATTCT2800.00145400588.03539230
GCTAATT2800.00145400588.03539219
Produced by FastQC (version 0.11.5)