FastQCFastQC Report
Mon 6 Jun 2016
ERR1379288.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379288.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences335222
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAATGC207.026589E-444.999432
CGTATGC250.002105121535.99952344
GCGGTTC250.002105121535.9995238
GAATGCG250.002105121535.99952333
AATGCGA250.002105121535.99952334
TCGTATG250.002105121535.99952343
GAATCGC352.816363E-432.1424312
AGCGGTT352.816363E-432.142437
CGGAAGA300.005134952330.0085561
CTCGTAT300.005142451329.99960342
AGACCGA300.005142451329.99960328
ATGCGAT300.005142451329.99960335
AATCGCT453.4838624E-529.99960113
TCGCTTG608.169782E-626.24965315
ATCGCTT602.4626742E-422.49970214
CGCTTGA602.4626742E-422.49970216
CCTTCGT754.580074E-521.005991
AGAATCG550.003931113520.45427511
ACGGGAT600.00650159818.74975213
AAACGGG750.001108092817.99976211
Produced by FastQC (version 0.11.5)