FastQCFastQC Report
Mon 6 Jun 2016
ERR1379287.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379287.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences315376
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC253.8848317E-544.999058
AGCGGTT253.8848317E-544.999057
AATGCCG253.8848317E-544.9990521
GAGCGGT253.8848317E-544.999056
CTCGTAT301.138186E-437.49920742
GACCGTC301.138186E-437.49920729
CGGTTCA301.138186E-437.4992079
CCGAGAC301.138186E-437.49920725
CGAGGTG250.002103375736.0049482
CGTATGC352.816118E-432.14217444
TCTCGTA352.816118E-432.14217441
AGACCGT352.816118E-432.14217428
ATGCCGA352.816118E-432.14217422
GCGCTCC300.005142193829.9993658
CCGAGGT406.139792E-428.1377891
TCGTATG406.156906E-428.12440543
AGAGCGG406.156906E-428.1244055
CGCTCCA507.143243E-526.999439
AAGAGCG450.001223600425.0034354
GAGACCG450.001224732424.9994727
Produced by FastQC (version 0.11.5)