FastQCFastQC Report
Mon 6 Jun 2016
ERR1379280.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379280.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470425
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCCCA750.001109443417.99868212
AGGCCGA1053.1052256E-517.14342542
CCGAGGC952.8164886E-416.57773445
GAGGCCG1209.7299344E-515.00049641
GCCGAGG1056.030817E-414.99890244
GGCCGAG1209.738757E-514.99890143
CACGCCC1108.579817E-414.31713411
ACCACGC1453.0988296E-513.9644949
CCACGCC1651.0410845E-412.27182910
GCCACCA3501.3460522E-1011.5718126
TTAGTAG2758.024472E-811.45492535
GTAGAGA3401.020453E-911.25037338
CACCACG1600.001106449911.2491768
AGTAGAG3052.818524E-811.0659437
TAGTAGA2901.6727427E-710.86242936
GCTAATT3602.6302587E-910.62422219
TGCCACC2057.756613E-49.8794265
GGATGGT1950.0056931189.2340193
TAGAGAC3003.2016113E-59.00029839
CAGCTAA2751.2289247E-48.99934217
Produced by FastQC (version 0.11.5)