FastQCFastQC Report
Mon 6 Jun 2016
ERR1379267.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379267.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences703800
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAGGG300.005146276729.99957320
CCGCCAC1052.3610482E-923.572774
CAGAGCG654.2363885E-420.76893634
AGAGCGA654.2363885E-420.76893635
CGCCACC1454.7602953E-918.6217485
CCCGCCA1205.1645675E-616.875963
CCGAGTA1004.1623795E-415.7508954
CCCGAGT1004.1623795E-415.7508953
CGAGTAG900.003750576915.0008535
GAGCGAG900.0037523514.99978736
TCCCGAG1251.378582E-414.4008182
CGTGAGC1555.78502E-513.0689741
GCCCGGC1801.6912976E-512.49982314
GCCACCG1506.444266E-411.9998296
CCCATAA1350.0040048711.66650211
ACCACGC1802.341962E-411.2498419
CCCGGCC1400.00525326411.2498415
CACGCCC1450.006820837510.86191511
CTACTCG1750.00233662710.28556732
TACTCGG2006.1989715E-410.12485633
Produced by FastQC (version 0.11.5)