FastQCFastQC Report
Mon 6 Jun 2016
ERR1379266.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379266.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568721
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAATCGC900.003751205314.9997666
AGAATCG1108.5799635E-414.3179585
AATCGCT950.005372154514.2103037
CGTGAGC1301.9208215E-413.8483731
CGTTGGA1250.00224936312.5998025
GACCATC1250.00224936312.59980235
CTCGAAC1600.001106536511.2498256
GCTACTC2004.9665825E-511.24982531
TCGAACT1650.001430940610.908927
TAGTCCC1450.006818191610.86189823
CGATTCC1500.00876894910.49983519
TATACTT1800.0029503299.99984517
GGATCAC2709.218065E-69.99984412
ACTAGAC2057.772965E-49.87789519
GTCTCGA1950.00570519459.2322484
GGTCTCG2350.00269688.61840253
AATATCT5251.8244464E-98.5728022
GAGCCAC3704.641861E-68.5148774
CTAGACA4001.4584348E-68.43736820
GAGAATC2800.00145317588.0370024
Produced by FastQC (version 0.11.5)