FastQCFastQC Report
Mon 6 Jun 2016
ERR1379265.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379265.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529294
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGAGCG250.002105324336.0026474
CCGTAAT300.005145307629.99936915
CGTGAGC850.002561457215.8835191
GAGCCAC2052.1664164E-814.2693414
GTAGGTC1000.00754499513.49971723
CGGGGTT1250.002247500212.6009261
TAGTCCC1852.2380545E-512.16190623
GTAGTCC1954.9058883E-410.38439722
CCTGTAG2201.306588E-410.22705819
CCACCAC3206.479695E-79.8435437
TGTAGTC2150.0012021199.418406521
GGAGGCC3053.8940314E-58.85227340
GCCACCA3653.871335E-68.6299566
TATCTTC3755.5645487E-68.4006184
AGTCCCA2750.00121802728.18164624
GGTGGTG2750.00121802728.1816468
GGTTGCA2500.00472184468.09983137
GTCCCAG2900.0020563147.758457725
CTACTCA2700.0094105337.499842632
TGAGCCA3350.0010273627.38860233
Produced by FastQC (version 0.11.5)