FastQCFastQC Report
Mon 6 Jun 2016
ERR1379262.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379262.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences860593
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGCGCA250.00210705535.99916531
GGCCGTA352.8201766E-432.14211320
TGCGCAG300.00514713229.99930432
GACCGTA406.1657134E-428.12434629
CGTATGC602.4652574E-422.50209444
TCTCGTA500.00226369222.50078441
AGCGGTT500.002264456422.4994777
GGCGGAT754.6017325E-520.99951220
ATGCCGA654.2377037E-420.76874722
GAGCGGT550.003934951520.455266
GCGGTTC550.00393627620.4540718
CGGTTCA550.00393627620.4540719
CGTGAAC550.00393627620.45407118
CTCGTAT600.006507885618.75065442
ACCGTAG600.00651006918.74956530
ACTCCCG600.00651006918.74956532
CGAGATT1056.02776E-415.0022661
CCCGCCA900.003753481214.99965127
ACCGCGC950.0053753914.21019659
TTCACCG1000.007547248613.5004715
Produced by FastQC (version 0.11.5)