FastQCFastQC Report
Mon 6 Jun 2016
ERR1379257.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379257.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences716293
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG250.002106307336.0009543
CCGCCGA250.002106307336.0009545
ATCTCGT450.001226413624.99891540
GCGGTTC500.002264354822.4990228
AGCGCTC754.601063E-520.9990887
CACCCGG706.9819955E-419.28487613
GCGCTCC901.8650577E-417.499248
CGCTCCA952.8184283E-416.5782289
CTCCGTC1104.6242414E-516.3674965
CGTTGGA1104.6242414E-516.3674965
CCGCCAC900.00374619815.0035394
ACTCCGT1209.724422E-515.0035374
AAGCGCT1056.03491E-414.999356
CGCCCGC1108.5538905E-414.324561
TCGTTGG1108.5674674E-414.321564
GAAAGCG950.00536499714.2138784
AAAGCGC950.00536499714.2138785
CGCCACC950.00536499714.2138785
CCTTCGT1150.00119697213.7017521
TTCGTTG1150.00119886713.6988813
Produced by FastQC (version 0.11.5)