FastQCFastQC Report
Mon 6 Jun 2016
ERR1379252.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379252.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences717067
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGTACG207.0302223E-445.00167541
ATCTCGT504.875983E-835.99882540
TCGTATG651.4015313E-831.15500543
CGGTTCA651.4024408E-831.1528329
ACCGGGA602.417528E-729.99902330
GACCGGG602.417528E-729.99902329
AGACCGG602.417528E-729.99902328
GTGCGCC300.005146801529.99902324
CTCGTAT702.8820068E-828.9296542
GCGGTTC702.8840077E-828.9276318
AGAGCGG654.8675065E-727.6933385
GAGCGGT654.8704715E-727.6914066
CGTATGC755.6308636E-827.00100344
ACCGCGC507.156295E-526.999129
CCGCGCC507.156295E-526.9991210
TCTCGTA709.2963455E-725.71524241
AGCGGTT709.3020026E-725.713457
CACCGCG551.3678036E-424.5446578
AAGAGCG751.6935555E-624.004244
AATGCCG751.6966424E-623.99921821
Produced by FastQC (version 0.11.5)