FastQCFastQC Report
Mon 6 Jun 2016
ERR1379251.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379251.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508901
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAGG300.005145473429.99895320
CGTATGC450.001225162825.00158544
CGTGAAG450.001225864924.99912836
CGGTTCA500.002263348322.4992149
CCGGGCG550.003927652720.4598621
TCGTATG550.003932127320.45584143
ACTAGAC1302.7643182E-819.03779619
ATCTCGT750.001109327717.99937240
CCTTCGT850.00255809115.8864811
CTTCGTT1056.021279E-415.0024242
GCCGAGA1056.030267E-414.99947624
TCGTTGG1108.566275E-414.3204964
GAAACGG1403.601371E-412.85669310
GCTAGAC1250.002249125912.5995633
TTCGTTG1300.003013870212.1173433
ATTGGCC1506.439981E-411.9995818
CGTTGGA1400.005242994511.2518175
CTAGACA2604.817157E-711.24960720
GAAGCAT2801.251934E-610.44606327
AACTAGA2402.766625E-510.312139518
Produced by FastQC (version 0.11.5)