FastQCFastQC Report
Mon 6 Jun 2016
ERR1379250.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379250.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences750066
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGA352.8202578E-432.14128522
AGAGCGG450.0012260325.0004445
GCGGTTC450.001226506724.9987778
GAGCGGT500.002263648422.50046
ACCGAGT602.4672167E-422.498930
AATGCCG500.002264525522.498921
CCGAGAC500.002264525522.498925
AGACCGA500.002264525522.498928
AAGAGCG550.003930319620.4590024
CTCGTAT550.00393487620.4549142
TCGTATG550.00393487620.4549143
AGCGGTT550.00393639620.4535477
ACGCCCG706.98267E-419.28477112
CGGTTCA600.006510273618.7490839
GACCGAG600.006510273618.74908329
GCACGAT600.006510273618.74908314
ACGTATT600.006510273618.74908323
GAGACCG750.001110098817.99911927
AGATCGC850.002560327315.8858133
CCGGCTA1056.035632E-414.99926816
Produced by FastQC (version 0.11.5)