FastQCFastQC Report
Mon 6 Jun 2016
ERR1379248.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379248.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences752158
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCCAC952.8114812E-416.5837734
CCCGCCA1209.720876E-515.0043663
TGCGATC900.003753347314.99937915
GGTGCGA900.003753347314.99937913
GTGCGAT1000.00754989413.49944114
CCTTCGT1352.639055E-413.3398751
CGCCACC1200.001651856713.128825
TTCGTTG1454.8332047E-412.4174073
CGGGGTT1701.3702647E-411.9176091
CGCCTGG1350.004006122211.66618413
CTTCGTT1450.00680611210.86523152
TCGTTGG1450.00680611210.86523154
CACGCCC1450.00682295110.8616211
CGTTGGA1500.00875343510.50305755
GGGTGAC1500.00877503610.49956628
TGAGCCG1750.002337474110.28528945
GTCTCGA2851.7535938E-59.4732939
ACTAGAC1900.0046168449.47329220
GGCATGT1900.0046168449.47329223
GAGCCAC4051.8138962E-89.4471944
Produced by FastQC (version 0.11.5)