FastQCFastQC Report
Mon 6 Jun 2016
ERR1379247.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379247.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences812817
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGTT300.005146725629.9995930
GAGCGGT500.002264223522.4996936
CCTTCGT1403.079549E-919.2878231
CGCCACC1501.4194484E-716.5018065
GTGCGTT850.002564531815.88213633
CACCCGC850.002564531815.88213636
TGCGTTC1056.0347904E-414.99979534
ACGGGAT1402.2286657E-514.464087513
CGGGATT1402.2286657E-514.464087514
CCGCCAC1108.577426E-414.3197484
TGTGCGT1000.007549199313.49981532
CTTCGTT1851.5241931E-613.3798422
CGTTGGA1709.384103E-613.2367425
TTCGTTG1952.7521874E-612.6936973
TCGTTGG1852.2385348E-512.1634924
CCCGCCA1300.003017716612.1167093
ACCACGC2158.197863E-611.511479
GGAAACG2402.2584281E-611.2498469
CCACGCC2056.3937674E-510.9754610
AGAATCG1650.001432063910.90894111
Produced by FastQC (version 0.11.5)