FastQCFastQC Report
Mon 6 Jun 2016
ERR1379244.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379244.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences771732
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAACG253.8900394E-544.99915731
CTCGTAT356.2464223E-638.57070542
CGGTATC356.2464223E-638.57070536
CGTATGC301.1392652E-437.50172844
CGAACGG352.8198332E-432.14225432
TCGTATG352.8198332E-432.14225443
GACCGAA406.164969E-428.12447429
AACGGTA450.001226323324.99953334
TCTCGTA450.001226323324.99953341
AGACCGA450.001226323324.99953328
GAACGGT450.001226323324.99953333
ACGGTAT551.3678071E-424.54499635
GAGACCG602.4668023E-422.49957827
TATCTCG500.002264186722.49957839
TCGTATA654.2370282E-420.7688439
ACCGAAC600.00650930618.7496530
ATCTCGT750.001109913317.99966240
ATCTTCG800.001708889316.8768715
GCGGTTC800.001710371816.8746838
TTCGTAT800.001710371816.8746838
Produced by FastQC (version 0.11.5)