FastQCFastQC Report
Mon 6 Jun 2016
ERR1379241.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379241.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1320932
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGAGCG1209.7553755E-514.99973434
CCGCACC1108.590686E-414.31792910
CGTGAGC2805.838956E-1012.8583761
CGGAAGC1454.8500943E-412.41357425
AGAGCGA1454.8500943E-412.41357435
GAACCCG2207.923136E-712.272511521
ATGCCCG1300.00302230912.11517112
GAGCGAG1506.451051E-411.99978736
GCGAGAC1558.495072E-411.61269838
AACCCGG2201.0598627E-511.24980222
GCCACCG2201.0598627E-511.2498026
AGCGAGA1903.8683586E-410.65770737
CCCGGGA2554.6779423E-610.58804824
ACCCGGG2352.2000584E-510.53172923
CCGGCTA1500.00877939610.49981416
TGCCCGG2151.0380185E-410.464931513
CCACGCC2801.2573801E-610.44624410
CCACCGC1750.002339021510.2855337
CCGGGAG3155.248712E-79.99982325
CGGGGTT2504.3432134E-59.90094951
Produced by FastQC (version 0.11.5)