FastQCFastQC Report
Mon 6 Jun 2016
ERR1379240.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379240.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences681731
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA352.8182642E-432.14463841
CGTTTCG300.00514256730.0038641
CTCGTAT300.005144412630.00166142
GAGCGGT450.001226170724.9995526
ACGCCCG500.00226390722.49959812
ATGCCGA500.00226390722.49959822
CACTGCG754.5997404E-520.9996248
AGACCGT600.006508515718.74966428
CACGCCC1205.1677634E-616.87469711
ACCACGC1652.3535904E-816.3633449
CCGGCTA1301.1052611E-515.57664316
CGGCTAA1301.1052611E-515.57664317
GGAAACG1108.583193E-414.3179259
CGCCCGG1108.583193E-414.31792513
CCACGCC1758.15613E-714.14260310
CACCACG2154.0612576E-813.6044068
GGCTAAT2907.2759576E-1113.1894218
CTTCGTT1200.001654513613.1257272
TGAGCCG1403.6014154E-412.85785645
CCTTCGT1250.002247717212.6016221
Produced by FastQC (version 0.11.5)