FastQCFastQC Report
Mon 6 Jun 2016
ERR1379238.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379238.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences821852
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAACG406.8139343E-944.99799332
GTAACGG406.8139343E-944.99799333
TCTCGTA504.8727088E-836.00277341
GACCGTA458.698953E-734.99843629
AACGGAT606.4301275E-933.74849335
CTCGTAT551.12628186E-732.72979442
TAACGGA551.1274824E-732.7258134
ACGGATC708.1308826E-1032.14142236
ACCGTAA651.4031684E-831.15245630
CCAATCG300.005147538629.9986619
CGGATCT602.41851E-729.99866137
AGAGCGG654.862086E-727.6978135
GAGACCG608.190675E-626.24882927
AGACCGT608.190675E-626.24882928
CGGAAGA709.2860137E-725.7193971
GAGCGGT709.30082E-725.71476
AGCGGTT851.893095E-723.8224687
TCGTATG802.9710536E-622.50173443
CGGTTCA802.974195E-622.4989979
CGTATGC855.023321E-621.17939244
Produced by FastQC (version 0.11.5)