FastQCFastQC Report
Mon 6 Jun 2016
ERR1379237.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379237.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences843478
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTTAG650.041.5375332
CTCGTAT659.094947E-1238.0760742
CCGGTTA751.8189894E-1235.99919531
ACCGGTT803.6379788E-1233.74924530
GACCGGT803.6379788E-1233.74924529
CGTATGC754.7293724E-1132.9992644
TCTCGTA754.7293724E-1132.9992641
AGAGCGG855.456968E-1231.767765
CGGTTCA855.456968E-1231.7639949
GAGCGGT855.456968E-1231.7639946
GCGGTTC952.3646862E-1128.4204168
AGCGGTT952.3646862E-1128.4204167
AATGCCG952.3646862E-1128.42041621
TCGTATG952.3646862E-1128.42041643
ATGCCGA952.3646862E-1128.42041622
CGGAAGA1053.6379788E-1227.866431
GAGACCG1105.456968E-1226.59031327
AAGAGCG1058.367351E-1125.7182834
AGACCGG1058.54925E-1125.71370928
ATCTCGT1052.3646862E-923.570940
Produced by FastQC (version 0.11.5)