FastQCFastQC Report
Mon 6 Jun 2016
ERR1379235.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379235.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences860082
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTAAC300.005147295529.99910713
GCGTGAT550.003936421620.45393814
CAAACGG600.006510312718.74944121
TCGTTGG1751.382432E-1018.0036534
TTCGTTG2005.0931703E-1116.8784243
CTTCGTT1401.2511464E-616.074692
CGTTGGA2009.240466E-1015.7522795
AACGGGA1907.9890015E-915.394279512
AAACGGG2202.1645974E-1015.34045411
CCCGCCA900.00374783715.0030423
GAAACGG1951.1257725E-814.99955510
CGGCTAA1654.1976273E-714.99955417
CGGGATT1859.605537E-814.59416114
CCTTCGT1553.602645E-614.5207621
CCGGCTA1553.615707E-614.515697516
CGGAAGC1251.3801613E-414.39957125
ACGGGAT1901.3309545E-714.21010413
TCCCGGG1000.007547567613.50038344
CCCGGGT1000.007547567613.50038345
CCCGGCT1801.6926002E-512.49962815
Produced by FastQC (version 0.11.5)