FastQCFastQC Report
Mon 6 Jun 2016
ERR1379233.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379233.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences778420
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT850.039.70888542
TCTCGTA900.037.5028441
AGCGGTT900.037.498027
TATCTCG900.037.4980239
CGTATGC950.035.5335744
ACCGCCT950.035.5244430
GACCGCC950.035.5244429
AGACCGC950.035.5244428
AGAGCGG1000.033.7525565
GAGACCG1000.033.7482227
GAGCGGT1000.033.748226
GCGGTTC950.033.1561438
AATGCCG1100.032.72554421
TCGTATG1050.032.1452943
CGGTTCA1000.031.4983379
ATGCCGA1100.030.68019922
CGCCTTC1250.030.59838332
ATCTCGT1150.029.34627340
CGGAAGA1200.028.1325511
CCGAGAC1200.028.12351425
Produced by FastQC (version 0.11.5)