Basic Statistics
Measure | Value |
---|---|
Filename | ERR1379232.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 831132 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCGGG | 20 | 7.0325297E-4 | 44.999516 | 7 |
GGGTCGG | 40 | 6.1650825E-4 | 28.124697 | 37 |
CGTATAA | 75 | 4.601042E-5 | 20.999777 | 10 |
GGTCGGG | 75 | 0.0011099512 | 17.999807 | 38 |
TCGTATA | 75 | 0.0011099512 | 17.999807 | 9 |
TTCGTAT | 85 | 0.0025645464 | 15.882183 | 8 |
CTTCGTA | 100 | 4.1656478E-4 | 15.749832 | 7 |
TGCCCGG | 140 | 2.2287217E-5 | 14.464131 | 13 |
TCTTCGT | 115 | 0.0012013849 | 13.695504 | 6 |
CCCGCCA | 140 | 3.6030778E-4 | 12.8577795 | 3 |
ATCTTCG | 125 | 0.0022507913 | 12.599866 | 5 |
CCGCCAC | 130 | 0.0030191704 | 12.115984 | 4 |
CCGGCTA | 140 | 0.0052544856 | 11.24988 | 16 |
CGGCTAA | 140 | 0.0052544856 | 11.24988 | 17 |
TCGCTTG | 160 | 0.0011074282 | 11.249879 | 9 |
GCCCGGC | 255 | 4.6707773E-6 | 10.588121 | 14 |
GAATCGC | 175 | 0.0023373219 | 10.285604 | 6 |
TATCTTC | 645 | 0.0 | 9.41907 | 4 |
CCAGGCG | 225 | 0.001818788 | 9.001529 | 1 |
AGGCCGA | 235 | 0.0027036855 | 8.616929 | 42 |