FastQCFastQC Report
Mon 6 Jun 2016
ERR1379232.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379232.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences831132
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCGGG207.0325297E-444.9995167
GGGTCGG406.1650825E-428.12469737
CGTATAA754.601042E-520.99977710
GGTCGGG750.001109951217.99980738
TCGTATA750.001109951217.9998079
TTCGTAT850.002564546415.8821838
CTTCGTA1004.1656478E-415.7498327
TGCCCGG1402.2287217E-514.46413113
TCTTCGT1150.001201384913.6955046
CCCGCCA1403.6030778E-412.85777953
ATCTTCG1250.002250791312.5998665
CCGCCAC1300.003019170412.1159844
CCGGCTA1400.005254485611.2498816
CGGCTAA1400.005254485611.2498817
TCGCTTG1600.001107428211.2498799
GCCCGGC2554.6707773E-610.58812114
GAATCGC1750.002337321910.2856046
TATCTTC6450.09.419074
CCAGGCG2250.0018187889.0015291
AGGCCGA2350.00270368558.61692942