FastQCFastQC Report
Mon 6 Jun 2016
ERR1379231.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379231.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences729428
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAGAC450.001226288224.9994325
TCGTATG551.3677451E-424.54489543
CGTATGC500.002264123422.49948544
GCGGTTC500.002264123422.4994858
AATGCGA500.002264123422.49948534
GAGACCG500.002264123422.49948527
GAGCGGT500.002264123422.4994856
TCTCGTA500.002264123422.49948541
CTCGTAT654.236839E-420.76875742
GACCGAA550.003935700320.45407929
AGAGCGG600.00650140418.7534285
TGCGATC600.00650912918.7495736
CCTTCGT800.001707945416.8780841
ATGCCGA800.001710297716.87461322
ACCCGCC850.00256083415.8852562
CGTTGGA1156.7664856E-515.6550365
TCGTTGG1209.72921E-515.0027424
TGCCGAG900.003752739914.99965823
TTCGTTG1251.3772148E-414.4026333
GTGGCGC950.00537433814.21020111
Produced by FastQC (version 0.11.5)