FastQCFastQC Report
Mon 6 Jun 2016
ERR1379229.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379229.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences680032
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCT250.002106504536.01
GCTCCGC406.1635335E-428.12536
AGCTCCG750.001109589518.00000235
GAGCCGA1004.16392E-415.7540
AGTGGCG1156.775988E-515.65217310
TGAGCCG1251.3791406E-414.439
CTCCGCC1250.002249882612.59999937
CGGCTAA1300.00301931812.11538429
CCGGCTA1506.443002E-412.00000128
CGCCTCC1506.443002E-412.00000140
TCCGCCT1350.004004206511.66666738
ATTGGCC1350.004004206511.66666712
GATCTCG1558.4845274E-411.61290318
CGGCTCA2251.3569685E-511.00000123
ATCTCGG1853.0183035E-410.94594619
TCGGCTC1853.0183035E-410.94594622
CTCGGCT1903.862532E-410.65789521
CGTGAGC1500.00877089410.5000011
TCTCGGC2006.1975827E-410.12520
CCAACTT2006.1975827E-410.1251
Produced by FastQC (version 0.11.5)