FastQCFastQC Report
Mon 6 Jun 2016
ERR1379226.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379226.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences676315
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGTA250.00210607236.0014832
AGCGCTC551.3676945E-424.5446477
AAAGCGC1201.1026714E-820.6258475
TTCGTAT550.00393563720.4538738
GCGCTCC550.00393563720.4538738
CGTGCCC706.9809455E-419.2850811
CTTCGTA600.00650902418.7493867
GAAAGCG851.2024498E-418.5315444
TCTTCGT851.20381395E-418.5288036
CCGTGCC851.20381395E-418.52880310
AAGCGCT1354.266076E-818.3327316
TTCGTTG1301.1038428E-515.5787143
CGTGAGC1951.1210432E-815.0028341
ACGGAAG900.003752613714.99950724
CACGCCC1251.3795079E-414.39952711
ATCTTCG950.00537152314.211115
TCGTTGG1453.097282E-513.9671244
CGGCTAA1453.1015996E-513.96505817
CGTTGGA1555.80067E-513.0650535
ACCACGC1555.8046946E-513.0640879
Produced by FastQC (version 0.11.5)