FastQCFastQC Report
Mon 6 Jun 2016
ERR1379223.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379223.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences763172
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCTCG250.002106801635.99952724
ATCGCTA300.00514651629.9996098
AAAGCGC702.700361E-522.501185
CCGCGCC500.002264090622.49970410
GAAAGCG706.9749856E-419.287994
ACGCCCG706.9811405E-419.28546112
AGCTCCG750.001109856317.99976535
GCCACCG952.8180797E-416.5787326
CGGCTAA1552.0636617E-715.96753317
GGCGGAG1156.778486E-515.65196931
CCTTCGT900.003749439315.0017691
CGCCCGG900.003752709614.99980413
GCTCCGC950.00537429114.210340536
GGCTAAT3600.013.7498218
CGCCTGG1000.007548617713.49982313
CGCCATT1000.007548617713.4998239
CGCCACC1352.6489416E-413.3340325
CCGGCTA1607.816362E-512.65608416
AAGCGCT1250.002250539612.5998346
TCGTTGG1350.00400144811.6680424
Produced by FastQC (version 0.11.5)