FastQCFastQC Report
Mon 6 Jun 2016
ERR1379221.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379221.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences811799
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGGTCG250.002106914535.9994121
CGTATGC653.6743586E-1034.6169544
GCGGTTC708.1308826E-1032.142338
TCGTATG751.7025741E-929.99950843
CGGAAGA852.0372681E-1029.122551
ATCTCGT803.3924152E-928.12453740
TGACGGC406.1651645E-428.12453717
CTCGTAT856.4774213E-926.47015442
AGCGGTT856.4774213E-926.4701547
GAGCGGT856.4774213E-926.4701546
GACCGTG801.0531585E-725.31208429
AGAGCGG901.1894372E-825.0011315
ACCGTGG901.1901648E-824.9995930
CGGTTCA952.1138476E-823.6838239
CCGTGGC952.1138476E-823.68382331
CGTGGCA1003.6416168E-822.4996332
AATGCCG1156.7630026E-921.52138321
TCTCGTA1056.103255E-821.42821941
AGACCGT955.5284727E-721.31544128
ATGCCGA1109.976793E-820.45420822
Produced by FastQC (version 0.11.5)