ERR1379218.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1379218.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	295447
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAACACATCTCGTATGCC	917	0.3103771573243255	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGGAAC	85	42.352306	31
GACCGGA	90	39.999397	29
AGACCGG	95	37.89417	28
CGGAACA	100	35.99946	32
AGCGGTT	100	35.99946	7
GAGACCG	100	35.99946	27
CGTATGC	95	35.5318	44
TCGTATG	95	35.5318	43
ACCGGAA	105	34.2852	30
CGGTTCA	105	34.2852	9
GAGCGGT	105	34.2852	6
CCGAGAC	105	34.2852	25
CATCTCG	100	33.749493	39
CGGAAGA	110	32.732323	1
GCGGTTC	110	32.726784	8
AAGAGCG	110	32.726784	4
AGAGCGG	110	32.726784	5
GTATGCC	105	32.147816	45
AATGCCG	115	31.303879	21
ATGCCGA	115	31.303879	22