ERR1379208.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1379208.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	351172
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTGGTTATCTCGTATGCC	1643	0.4678619024295787	Illumina Paired End PCR Primer 2 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	175	44.99929	42
CGTATGC	180	43.75554	44
TCGTATG	180	43.75554	43
TCTCGTA	180	43.74931	41
AGACCGT	180	43.74931	28
ACCGTTG	180	43.74931	30
CGTTGGT	185	42.566895	32
AATGCCG	185	42.566895	21
GAGACCG	185	42.566895	27
CCGTTGG	195	41.537804	31
CCGAGAC	190	41.446712	25
TGCCGAG	195	40.383976	23
AGCGGTT	190	40.26252	7
AGAGCGG	190	40.26252	5
ATCTCGT	200	39.37438	40
GACCGTT	200	39.37438	29
AAGAGCG	195	39.23015	4
ATGCCGA	205	38.41403	22
GCGGTTC	200	38.249397	8
TATCTCG	210	37.49941	39