ERR1379170.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1379170.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	548256
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTTAACCATCTCGTATGCC	795	0.14500525302048678	Illumina Paired End PCR Primer 2 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGACCGT	80	39.373486	28
GACCGTT	85	37.057396	29
CTCGTAT	95	35.52495	42
AGAGCGG	95	33.15964	5
CGTTAAC	95	33.156616	32
GAGCGGT	100	31.50166	6
CGTATGC	100	31.498785	44
GCGGTTC	100	31.498785	8
TCTCGTA	100	31.498785	41
ACCGTTA	100	31.498785	30
ATGCCGA	100	31.498785	22
CGGAAGA	105	30.01253	1
CATCTCG	105	29.998844	39
AGCGGTT	105	29.998844	7
AATGCCG	105	29.998844	21
CCGAGAC	105	29.998844	25
CCGTTAA	105	29.998844	31
ATCTCGT	110	28.63526	40
CGGTTCA	110	28.63526	9
GAGACCG	110	28.63526	27