ERR1379168.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1379168.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	243932
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCGTTATATCTCGTATGCC	964	0.3951921027171507	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	70	45.0	44
GCGTTAT	70	45.0	33
ATCTCGT	75	42.0	40
ACCGCGT	75	42.0	30
CGTTATA	75	42.0	34
TATCTCG	75	42.0	39
AGACCGC	75	42.0	28
TCGTATG	75	42.0	43
CCGCGTT	75	42.0	31
GACCGCG	80	39.375	29
GAGACCG	80	39.375	27
TCTCGTA	80	39.375	41
CGCGTTA	80	39.375	32
GTATGCC	95	35.526314	45
CTCGTAT	90	35.0	42
CCGAGAC	85	34.411762	25
AGAGCGG	100	33.75	5
GCGGTTC	105	32.142857	8
AGCGGTT	105	32.142857	7
GAGCGGT	105	32.142857	6