FastQCFastQC Report
Mon 6 Jun 2016
ERR1379151.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379151.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593395
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC11500.19380008257568734Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAG1300.041.53783829
ACCGAGA1350.039.999430
AATCTCG1300.039.80709539
GCGGTTC1450.038.795798
CGTATGC1350.038.3327644
CGGTTCA1500.037.4994359
AAGAGCG1550.036.2928354
GAGCGGT1550.036.2928356
CCGAGAC1550.036.2897825
TGCCGAG1550.036.2897823
GAGACCG1500.035.9994627
AGACCGA1500.035.9994628
CTCGTAT1500.034.4994842
AGAGCGG1650.034.0932735
AATGCCG1650.034.09039721
ATGCCGA1650.034.09039722
CGAGATT1600.033.74949632
TCTCGTA1550.033.38659741
TCGTATG1550.033.38659743
CGGAAGA1650.032.729541