Basic Statistics
Measure | Value |
---|---|
Filename | ERR1379151.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 593395 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC | 1150 | 0.19380008257568734 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGAG | 130 | 0.0 | 41.537838 | 29 |
ACCGAGA | 135 | 0.0 | 39.9994 | 30 |
AATCTCG | 130 | 0.0 | 39.807095 | 39 |
GCGGTTC | 145 | 0.0 | 38.79579 | 8 |
CGTATGC | 135 | 0.0 | 38.33276 | 44 |
CGGTTCA | 150 | 0.0 | 37.499435 | 9 |
AAGAGCG | 155 | 0.0 | 36.292835 | 4 |
GAGCGGT | 155 | 0.0 | 36.292835 | 6 |
CCGAGAC | 155 | 0.0 | 36.28978 | 25 |
TGCCGAG | 155 | 0.0 | 36.28978 | 23 |
GAGACCG | 150 | 0.0 | 35.99946 | 27 |
AGACCGA | 150 | 0.0 | 35.99946 | 28 |
CTCGTAT | 150 | 0.0 | 34.49948 | 42 |
AGAGCGG | 165 | 0.0 | 34.093273 | 5 |
AATGCCG | 165 | 0.0 | 34.090397 | 21 |
ATGCCGA | 165 | 0.0 | 34.090397 | 22 |
CGAGATT | 160 | 0.0 | 33.749496 | 32 |
TCTCGTA | 155 | 0.0 | 33.386597 | 41 |
TCGTATG | 155 | 0.0 | 33.386597 | 43 |
CGGAAGA | 165 | 0.0 | 32.72954 | 1 |