FastQCFastQC Report
Mon 6 Jun 2016
ERR1379078.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379078.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences802411
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGAT250.002107417735.9976136
GGACGAC250.002107417735.9976128
AACGGTT300.005148017329.99800321
GCGTTCT406.166906E-428.1231340
TCTCGTA406.166906E-428.1231341
GACCGAT507.15899E-526.99820529
CGTATGC450.001226707424.99833944
TATCTCG450.001226707424.99833939
CCGATTC500.002264893422.49850531
AGACCGA654.238595E-420.7678528
CTCGTAT550.003937033520.45318642
GCGGTTC550.003937033520.4531868
GAACGGT550.003937033520.45318620
TCGTATG550.003937033520.45318643
ATCTCGT750.001110321317.99880440
CCGGCTA800.001710998516.87387816
CGGAGGT800.001710998516.87387827
ATCTTCG1104.62252E-516.3686685
CTTCGTA1104.637348E-516.3625497
CGGCTAA850.00256539715.88129817
Produced by FastQC (version 0.11.5)