FastQCFastQC Report
Mon 6 Jun 2016
ERR1379076.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379076.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488073
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACGA207.029607E-444.9995934
CCGCGTA207.029607E-444.9995931
GCGTACG207.029607E-444.9995933
CCGGGGG250.002106017235.99967638
CGTATGC250.002106017235.99967644
ACCGCGT250.002106017235.99967630
TACGATC250.002106017235.99967636
CGCGTAC250.002106017235.99967632
AGACCGC352.8181652E-432.14256728
CTCGTAT300.00514462129.99972742
GCGGTTC300.00514462129.9997278
GACCGCG300.00514462129.99972729
TCTCGTA300.00514462129.99972741
TCGTATG300.00514462129.99972743
AGATCGT406.157655E-428.1276263
CGGTTCA406.1613467E-428.1247449
TCGTGCC406.1613467E-428.1247446
GAAAGCG550.003933551320.454364
GAGACCG550.003933551320.4543627
AAAGCGC706.9760176E-419.285545
Produced by FastQC (version 0.11.5)