FastQCFastQC Report
Mon 6 Jun 2016
ERR1379071.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379071.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences922361
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACCCG250.00210705535.99943525
GAGCGGT708.1308826E-1032.1440966
TCTCGTA755.637412E-826.99957741
AGACCGC856.4792403E-926.47017528
CGTATGC801.0534859E-725.31210544
CTCGTAT801.0534859E-725.31210542
TTGCGCC450.001226095425.0009656
GCGGTTC901.1905286E-824.9996098
CGTGACT450.001226482924.99960915
AGCGGTT901.1905286E-824.9996097
CCGAGAC851.893095E-723.82315625
AGAGCGG1003.6408892E-822.5008685
GACCGCA903.2859862E-722.49964729
CGGAAGA1156.7484507E-921.5260721
CGGTTCA1056.10562E-821.4282369
CCGCAGA955.53011E-721.31545631
TGCCGAG955.53011E-721.31545623
GACCCGC550.00393631420.45422626
TCGTATG1009.052292E-720.24968343
ACCGCAG1051.4451525E-619.28541230
Produced by FastQC (version 0.11.5)