Basic Statistics
Measure | Value |
---|---|
Filename | ERR1379070.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 858166 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCTTAT | 35 | 2.820472E-4 | 32.14152 | 16 |
GCGGTTC | 50 | 1.9814852E-6 | 31.498695 | 8 |
GACCGGT | 45 | 3.4908117E-5 | 29.998756 | 29 |
CGTCCAC | 30 | 0.0051475847 | 29.998755 | 33 |
AGCGGTT | 55 | 4.1646636E-6 | 28.635176 | 7 |
ATGCCGA | 55 | 4.1646636E-6 | 28.635176 | 22 |
GCGCCCG | 65 | 4.872727E-7 | 27.69116 | 12 |
CTCGTAT | 50 | 7.15834E-5 | 26.99888 | 42 |
TCGTATG | 50 | 7.15834E-5 | 26.99888 | 43 |
CGTATGC | 60 | 8.191026E-6 | 26.24891 | 44 |
AGACCGG | 60 | 8.191026E-6 | 26.24891 | 28 |
ACCGGTG | 55 | 1.3681929E-4 | 24.544437 | 30 |
CCGGTGA | 55 | 1.3681929E-4 | 24.544437 | 31 |
GAGCGGT | 65 | 1.5215937E-5 | 24.234001 | 6 |
CGGTTCA | 65 | 1.5236554E-5 | 24.229765 | 9 |
TCTCGTA | 60 | 2.4674952E-4 | 22.499065 | 41 |
CCGAGAC | 60 | 2.4674952E-4 | 22.499065 | 25 |
CGCGCCC | 65 | 4.23821E-4 | 20.768372 | 11 |
AAGAGCG | 80 | 7.5490185E-5 | 19.691273 | 4 |
ATCTCGT | 80 | 7.562556E-5 | 19.686684 | 40 |