FastQCFastQC Report
Mon 6 Jun 2016
ERR1379070.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379070.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences858166
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTTAT352.820472E-432.1415216
GCGGTTC501.9814852E-631.4986958
GACCGGT453.4908117E-529.99875629
CGTCCAC300.005147584729.99875533
AGCGGTT554.1646636E-628.6351767
ATGCCGA554.1646636E-628.63517622
GCGCCCG654.872727E-727.6911612
CTCGTAT507.15834E-526.9988842
TCGTATG507.15834E-526.9988843
CGTATGC608.191026E-626.2489144
AGACCGG608.191026E-626.2489128
ACCGGTG551.3681929E-424.54443730
CCGGTGA551.3681929E-424.54443731
GAGCGGT651.5215937E-524.2340016
CGGTTCA651.5236554E-524.2297659
TCTCGTA602.4674952E-422.49906541
CCGAGAC602.4674952E-422.49906525
CGCGCCC654.23821E-420.76837211
AAGAGCG807.5490185E-519.6912734
ATCTCGT807.562556E-519.68668440