FastQCFastQC Report
Mon 6 Jun 2016
ERR1379066.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379066.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737363
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC659.094947E-1238.075228
GCACGTC250.002102882836.0130273
TCGTATG855.456968E-1231.7632743
CTCGTAT801.0004442E-1030.93610242
TCTCGTA801.0004442E-1030.93610241
CTACGAA300.00514721529.99864425
ACAGCGC300.00514721529.9986447
CGGAAGA1053.6379788E-1227.8672221
ATCTCGT1053.6379788E-1227.8558840
CGTATGC903.947207E-1027.49875844
TCGTGCC608.171986E-626.2559366
GAGACCG957.403287E-1026.05145327
GACCGCA1001.3442332E-924.7488829
CGGTTCA1101.5097612E-1024.5443469
CCGAGAC1101.5097612E-1024.54434625
CGCAGGC952.1138476E-823.68313832
GCAGGCG952.1138476E-823.68313833
GGCGATC952.1138476E-823.68313836
ACCGCAG1052.3646862E-923.57036230
GAGCGGT1152.6375346E-1023.483576
Produced by FastQC (version 0.11.5)