FastQCFastQC Report
Mon 6 Jun 2016
ERR1379063.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379063.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences895359
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTCCG700.038.5697532
ACCGGTC659.094947E-1238.0752730
GACCGGT601.546141E-1037.4983729
GCCGTCG250.002107309635.99843612
CCGGTCC803.6379788E-1233.74853531
CTCGTAT754.7293724E-1132.9985742
TCGTATG754.7293724E-1132.9985743
GGTCCGC801.0004442E-1030.9361633
TCTCGTA801.0004442E-1030.9361641
GTCCGCA852.0372681E-1029.1163834
AGACCGG901.1908924E-824.99891328
CGTATGC1001.3442332E-924.74892444
CATCTCG1001.3442332E-924.74892439
CCGAGAC952.1151209E-823.6831825
CGCATCT1052.3665052E-923.57040437
TCCGCAT1104.0508894E-922.49902235
AGCGGTT1104.0508894E-922.4990227
CGGTTCA1156.7666406E-921.5208039
GAGACCG1056.106893E-821.4276427
AGAGCGG1201.1028533E-820.627565
Produced by FastQC (version 0.11.5)