FastQCFastQC Report
Mon 6 Jun 2016
ERR1379061.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379061.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences924495
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCCGA751.7043931E-929.99855833
CGTCCCG751.7043931E-929.99855832
CATCGAC300.00514795429.99855627
GCATCCG300.00514795429.99855638
CGAATCT803.3960532E-928.12364837
GAGCGGT1053.6379788E-1227.8618326
CTCGTAT903.965397E-1027.49867842
CGGTTCA903.965397E-1027.4986789
AGAGCGG1250.027.0045455
GCGGTTC957.421477E-1026.0513788
CCGAATC901.1910743E-824.99879836
ATGCCGA901.1910743E-824.99879822
TCTCGTA1001.3442332E-924.7488141
ACCGTCC1001.3442332E-924.7488130
CGTATGC1101.5097612E-1024.54427344
CCGTCCC1101.5097612E-1024.54427331
ATCTCGT1104.0527084E-922.49891940
TCGTATG1104.0527084E-922.49891943
AGCGGTT1257.530616E-1021.598967
GACCGTC1201.1050361E-820.62400829
Produced by FastQC (version 0.11.5)