FastQCFastQC Report
Mon 6 Jun 2016
ERR1379051.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379051.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences669180
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT301.1396574E-437.49862742
TCTCGTA406.1647466E-428.12397441
CGCTTGT406.1647466E-428.12397432
CTCGGGT507.1448696E-527.0050686
TCGTATG450.0012262824.99908643
CCACCGG500.002261160922.5042231
ATCTCGT500.002264108722.4991840
CGTATGC500.002264108722.4991844
GACCGCT500.002264108722.4991829
AGACCGC500.002264108722.4991828
AAGCGGC600.006500673518.7535174
GCGGTTC600.006506285618.7507158
ATCCCGA600.006509093618.74931328
GAGCGGT750.00110816818.0033786
GTATGCC1053.110258E-517.14223145
AGAGCGG800.001707690516.8781665
CGTTTTA850.00256045515.8853341
CGGGGTT1004.1578538E-415.7529561
CGCCACC1004.1578538E-415.7529565
CCTTCGT950.005366223414.2131941
Produced by FastQC (version 0.11.5)