FastQCFastQC Report
Mon 6 Jun 2016
ERR1379042.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379042.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences895059
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCAGCGG300.00514625130.00048439
CGAGATT550.003931680720.4583031
ACGTTCC600.0065087918.75030325
AGAGCGG850.002563337815.8834965
GCCACCG1301.1050899E-515.5780466
CCCGCCA950.00536823514.2131393
CCGGCTA950.005376199714.20996316
TCGAGAC1150.001200761213.6966384
CGAGACC1504.2655505E-513.5009735
GGTGGCG1558.491953E-411.6124428
CACGCCC1400.0052561611.24955311
GTGGCGG1400.0052561611.2495539
CGTGAGC1903.858547E-410.6598541
CCCGGCT1850.00370553749.72934315
GCACTCC4651.895387E-99.19318416
GGCTAAT3258.406712E-68.99964218
ACCACGC2050.00862286158.7801399
GTAGTCC2700.00101759728.33300222
AGGTTGC3603.0451694E-58.12513236
GGTTGCA3351.1684305E-48.05983237
Produced by FastQC (version 0.11.5)