FastQCFastQC Report
Mon 6 Jun 2016
ERR1379040.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379040.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences859491
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT803.6379788E-1233.74864642
GCGGTTC900.032.49878
TCGTATG855.456968E-1231.76343243
AAGAGCG950.030.7936134
GAGCGGT950.030.7900316
CGTATGC901.2732926E-1129.99879844
TCTCGTA901.2732926E-1129.99879841
ATGCCGA901.2732926E-1129.99879822
CGGTTCA1050.029.9987969
TATCTCG952.3646862E-1128.41991439
AGCGGTT1053.6379788E-1227.8560267
CCGAGAC957.421477E-1026.05158825
GACCGTG1058.54925E-1125.71325529
TGCCGAG1058.54925E-1125.71325523
AGAGCGG1159.094947E-1225.4382025
ATCTCGT1101.5097612E-1024.5444740
AATGCCG1101.5097612E-1024.5444721
GAGACCG1152.6557245E-1023.4773227
AGACCGT1152.6557245E-1023.4773228
CGTGCCA1353.6379788E-1223.33239732